analysis(matlab): per-variation subfolders (grouping x window) for the paper LME

Add make_variations.m + variation_analyze.m generating 20 self-contained
subfolders under analysis/matlab/variations/, one per grouping x day-window,
each with exactly three files: data.csv (curated subset), analyze.m (a simple
standalone script fitting behavior ~ stim + day + stim:day + (1|rat) on the
success COUNT), and result.txt (its output). Plus variations/SUMMARY.csv.

Groupings (stim=1 / stim=0, other groups dropped):
  unmerge     B2 vs A2
  right_only  B2+Right vs A2            (Box-A dropped)
  naive_a2    B2 vs A2+Naive           (Right, Box-A dropped)
  naive_boxa  B2 vs A2+Naive+Box-A     (Right dropped)
Windows: 0-10, 0-13, 0-5, 6-10, 6-13. All 20 have equal day coverage.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Experiments DB Dev
2026-07-20 20:49:54 -04:00
parent 963fd889b2
commit 969c0205e8
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subject,group,day,success,total,stim
Banh-mi-1,Electrode-Box-B2,0,13,84,1
Banh-mi-1,Electrode-Box-B2,1,35,86,1
Banh-mi-1,Electrode-Box-B2,2,47,110,1
Banh-mi-1,Electrode-Box-B2,3,65,140,1
Banh-mi-1,Electrode-Box-B2,4,70,127,1
Banh-mi-1,Electrode-Box-B2,5,102,142,1
Banh-mi-1,Electrode-Box-B2,6,90,131,1
Banh-mi-1,Electrode-Box-B2,7,109,148,1
Banh-mi-1,Electrode-Box-B2,8,104,137,1
Banh-mi-1,Electrode-Box-B2,9,119,150,1
Banh-mi-1,Electrode-Box-B2,10,121,158,1
Banh-mi-2,Electrode-Box-A2,0,25,97,0
Banh-mi-2,Electrode-Box-A2,1,22,101,0
Banh-mi-2,Electrode-Box-A2,2,22,119,0
Banh-mi-2,Electrode-Box-A2,3,29,118,0
Banh-mi-2,Electrode-Box-A2,4,27,136,0
Banh-mi-2,Electrode-Box-A2,5,43,146,0
Banh-mi-2,Electrode-Box-A2,6,74,146,0
Banh-mi-2,Electrode-Box-A2,7,70,148,0
Banh-mi-2,Electrode-Box-A2,8,65,130,0
Banh-mi-2,Electrode-Box-A2,9,79,151,0
Banh-mi-2,Electrode-Box-A2,10,93,152,0
Egg-tart-1,Electrode-Box-B2,0,7,56,1
Egg-tart-1,Electrode-Box-B2,1,16,78,1
Egg-tart-1,Electrode-Box-B2,2,23,103,1
Egg-tart-1,Electrode-Box-B2,3,63,120,1
Egg-tart-1,Electrode-Box-B2,4,69,132,1
Egg-tart-1,Electrode-Box-B2,5,83,136,1
Egg-tart-1,Electrode-Box-B2,6,71,142,1
Egg-tart-1,Electrode-Box-B2,7,79,138,1
Egg-tart-1,Electrode-Box-B2,8,98,142,1
Egg-tart-1,Electrode-Box-B2,9,89,139,1
Egg-tart-1,Electrode-Box-B2,10,96,143,1
Egg-tart-2,Electrode-Box-A2,0,9,32,0
Egg-tart-2,Electrode-Box-A2,1,2,38,0
Egg-tart-2,Electrode-Box-A2,2,31,93,0
Egg-tart-2,Electrode-Box-A2,3,44,101,0
Egg-tart-2,Electrode-Box-A2,4,54,131,0
Egg-tart-2,Electrode-Box-A2,5,84,139,0
Egg-tart-2,Electrode-Box-A2,6,85,145,0
Egg-tart-2,Electrode-Box-A2,7,79,143,0
Egg-tart-2,Electrode-Box-A2,8,76,131,0
Egg-tart-2,Electrode-Box-A2,9,88,149,0
Egg-tart-2,Electrode-Box-A2,10,81,151,0
Khoai-lang-1,Right-Electrode,0,3,69,1
Khoai-lang-1,Right-Electrode,1,18,97,1
Khoai-lang-1,Right-Electrode,2,27,84,1
Khoai-lang-1,Right-Electrode,3,46,121,1
Khoai-lang-1,Right-Electrode,4,65,143,1
Khoai-lang-1,Right-Electrode,5,76,141,1
Khoai-lang-1,Right-Electrode,6,79,146,1
Khoai-lang-1,Right-Electrode,7,81,153,1
Khoai-lang-1,Right-Electrode,8,98,144,1
Khoai-lang-1,Right-Electrode,9,101,149,1
Khoai-lang-1,Right-Electrode,10,103,150,1
Root-beer-1,Electrode-Box-B2,0,11,85,1
Root-beer-1,Electrode-Box-B2,1,18,76,1
Root-beer-1,Electrode-Box-B2,2,40,105,1
Root-beer-1,Electrode-Box-B2,3,55,134,1
Root-beer-1,Electrode-Box-B2,4,75,136,1
Root-beer-1,Electrode-Box-B2,5,64,133,1
Root-beer-1,Electrode-Box-B2,6,104,139,1
Root-beer-1,Electrode-Box-B2,7,98,148,1
Root-beer-1,Electrode-Box-B2,8,81,145,1
Root-beer-1,Electrode-Box-B2,9,89,156,1
Root-beer-1,Electrode-Box-B2,10,105,158,1
Root-beer-2,Electrode-Box-A2,0,22,74,0
Root-beer-2,Electrode-Box-A2,1,31,87,0
Root-beer-2,Electrode-Box-A2,2,49,134,0
Root-beer-2,Electrode-Box-A2,3,31,89,0
Root-beer-2,Electrode-Box-A2,4,60,140,0
Root-beer-2,Electrode-Box-A2,5,84,147,0
1 subject group day success total stim
2 Banh-mi-1 Electrode-Box-B2 0 13 84 1
3 Banh-mi-1 Electrode-Box-B2 1 35 86 1
4 Banh-mi-1 Electrode-Box-B2 2 47 110 1
5 Banh-mi-1 Electrode-Box-B2 3 65 140 1
6 Banh-mi-1 Electrode-Box-B2 4 70 127 1
7 Banh-mi-1 Electrode-Box-B2 5 102 142 1
8 Banh-mi-1 Electrode-Box-B2 6 90 131 1
9 Banh-mi-1 Electrode-Box-B2 7 109 148 1
10 Banh-mi-1 Electrode-Box-B2 8 104 137 1
11 Banh-mi-1 Electrode-Box-B2 9 119 150 1
12 Banh-mi-1 Electrode-Box-B2 10 121 158 1
13 Banh-mi-2 Electrode-Box-A2 0 25 97 0
14 Banh-mi-2 Electrode-Box-A2 1 22 101 0
15 Banh-mi-2 Electrode-Box-A2 2 22 119 0
16 Banh-mi-2 Electrode-Box-A2 3 29 118 0
17 Banh-mi-2 Electrode-Box-A2 4 27 136 0
18 Banh-mi-2 Electrode-Box-A2 5 43 146 0
19 Banh-mi-2 Electrode-Box-A2 6 74 146 0
20 Banh-mi-2 Electrode-Box-A2 7 70 148 0
21 Banh-mi-2 Electrode-Box-A2 8 65 130 0
22 Banh-mi-2 Electrode-Box-A2 9 79 151 0
23 Banh-mi-2 Electrode-Box-A2 10 93 152 0
24 Egg-tart-1 Electrode-Box-B2 0 7 56 1
25 Egg-tart-1 Electrode-Box-B2 1 16 78 1
26 Egg-tart-1 Electrode-Box-B2 2 23 103 1
27 Egg-tart-1 Electrode-Box-B2 3 63 120 1
28 Egg-tart-1 Electrode-Box-B2 4 69 132 1
29 Egg-tart-1 Electrode-Box-B2 5 83 136 1
30 Egg-tart-1 Electrode-Box-B2 6 71 142 1
31 Egg-tart-1 Electrode-Box-B2 7 79 138 1
32 Egg-tart-1 Electrode-Box-B2 8 98 142 1
33 Egg-tart-1 Electrode-Box-B2 9 89 139 1
34 Egg-tart-1 Electrode-Box-B2 10 96 143 1
35 Egg-tart-2 Electrode-Box-A2 0 9 32 0
36 Egg-tart-2 Electrode-Box-A2 1 2 38 0
37 Egg-tart-2 Electrode-Box-A2 2 31 93 0
38 Egg-tart-2 Electrode-Box-A2 3 44 101 0
39 Egg-tart-2 Electrode-Box-A2 4 54 131 0
40 Egg-tart-2 Electrode-Box-A2 5 84 139 0
41 Egg-tart-2 Electrode-Box-A2 6 85 145 0
42 Egg-tart-2 Electrode-Box-A2 7 79 143 0
43 Egg-tart-2 Electrode-Box-A2 8 76 131 0
44 Egg-tart-2 Electrode-Box-A2 9 88 149 0
45 Egg-tart-2 Electrode-Box-A2 10 81 151 0
46 Khoai-lang-1 Right-Electrode 0 3 69 1
47 Khoai-lang-1 Right-Electrode 1 18 97 1
48 Khoai-lang-1 Right-Electrode 2 27 84 1
49 Khoai-lang-1 Right-Electrode 3 46 121 1
50 Khoai-lang-1 Right-Electrode 4 65 143 1
51 Khoai-lang-1 Right-Electrode 5 76 141 1
52 Khoai-lang-1 Right-Electrode 6 79 146 1
53 Khoai-lang-1 Right-Electrode 7 81 153 1
54 Khoai-lang-1 Right-Electrode 8 98 144 1
55 Khoai-lang-1 Right-Electrode 9 101 149 1
56 Khoai-lang-1 Right-Electrode 10 103 150 1
57 Root-beer-1 Electrode-Box-B2 0 11 85 1
58 Root-beer-1 Electrode-Box-B2 1 18 76 1
59 Root-beer-1 Electrode-Box-B2 2 40 105 1
60 Root-beer-1 Electrode-Box-B2 3 55 134 1
61 Root-beer-1 Electrode-Box-B2 4 75 136 1
62 Root-beer-1 Electrode-Box-B2 5 64 133 1
63 Root-beer-1 Electrode-Box-B2 6 104 139 1
64 Root-beer-1 Electrode-Box-B2 7 98 148 1
65 Root-beer-1 Electrode-Box-B2 8 81 145 1
66 Root-beer-1 Electrode-Box-B2 9 89 156 1
67 Root-beer-1 Electrode-Box-B2 10 105 158 1
68 Root-beer-2 Electrode-Box-A2 0 22 74 0
69 Root-beer-2 Electrode-Box-A2 1 31 87 0
70 Root-beer-2 Electrode-Box-A2 2 49 134 0
71 Root-beer-2 Electrode-Box-A2 3 31 89 0
72 Root-beer-2 Electrode-Box-A2 4 60 140 0
73 Root-beer-2 Electrode-Box-A2 5 84 147 0