analysis(matlab): per-variation subfolders (grouping x window) for the paper LME

Add make_variations.m + variation_analyze.m generating 20 self-contained
subfolders under analysis/matlab/variations/, one per grouping x day-window,
each with exactly three files: data.csv (curated subset), analyze.m (a simple
standalone script fitting behavior ~ stim + day + stim:day + (1|rat) on the
success COUNT), and result.txt (its output). Plus variations/SUMMARY.csv.

Groupings (stim=1 / stim=0, other groups dropped):
  unmerge     B2 vs A2
  right_only  B2+Right vs A2            (Box-A dropped)
  naive_a2    B2 vs A2+Naive           (Right, Box-A dropped)
  naive_boxa  B2 vs A2+Naive+Box-A     (Right dropped)
Windows: 0-10, 0-13, 0-5, 6-10, 6-13. All 20 have equal day coverage.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Experiments DB Dev
2026-07-20 20:49:54 -04:00
parent 963fd889b2
commit 969c0205e8
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subject,group,day,success,total,stim
Banh-mi-1,Electrode-Box-B2,6,90,131,1
Banh-mi-1,Electrode-Box-B2,7,109,148,1
Banh-mi-1,Electrode-Box-B2,8,104,137,1
Banh-mi-1,Electrode-Box-B2,9,119,150,1
Banh-mi-1,Electrode-Box-B2,10,121,158,1
Banh-mi-1,Electrode-Box-B2,11,121,148,1
Banh-mi-1,Electrode-Box-B2,12,120,149,1
Banh-mi-1,Electrode-Box-B2,13,135,154,1
Banh-mi-2,Electrode-Box-A2,6,74,146,0
Banh-mi-2,Electrode-Box-A2,7,70,148,0
Banh-mi-2,Electrode-Box-A2,8,65,130,0
Banh-mi-2,Electrode-Box-A2,9,79,151,0
Banh-mi-2,Electrode-Box-A2,10,93,152,0
Egg-tart-1,Electrode-Box-B2,6,71,142,1
Egg-tart-1,Electrode-Box-B2,7,79,138,1
Egg-tart-1,Electrode-Box-B2,8,98,142,1
Egg-tart-1,Electrode-Box-B2,9,89,139,1
Egg-tart-1,Electrode-Box-B2,10,96,143,1
Egg-tart-1,Electrode-Box-B2,11,96,148,1
Egg-tart-1,Electrode-Box-B2,12,101,156,1
Egg-tart-1,Electrode-Box-B2,13,103,152,1
Egg-tart-2,Electrode-Box-A2,6,85,145,0
Egg-tart-2,Electrode-Box-A2,7,79,143,0
Egg-tart-2,Electrode-Box-A2,8,76,131,0
Egg-tart-2,Electrode-Box-A2,9,88,149,0
Egg-tart-2,Electrode-Box-A2,10,81,151,0
Egg-tart-2,Electrode-Box-A2,11,78,152,0
Egg-tart-2,Electrode-Box-A2,12,96,155,0
Egg-tart-2,Electrode-Box-A2,13,84,155,0
Khoai-lang-2,Naive,6,21,72,0
Khoai-lang-2,Naive,7,23,99,0
Khoai-lang-2,Naive,8,64,136,0
Khoai-lang-2,Naive,9,75,131,0
Khoai-lang-2,Naive,10,63,134,0
Khoai-lang-2,Naive,11,59,139,0
Khoai-lang-2,Naive,12,51,129,0
Khoai-lang-2,Naive,13,73,143,0
Khoai-tay-1,Electrode-Box-A,6,81,137,0
Khoai-tay-1,Electrode-Box-A,7,78,147,0
Khoai-tay-1,Electrode-Box-A,8,91,132,0
Khoai-tay-1,Electrode-Box-A,9,99,146,0
Khoai-tay-1,Electrode-Box-A,10,94,143,0
Khoai-tay-1,Electrode-Box-A,11,110,156,0
Khoai-tay-1,Electrode-Box-A,12,105,143,0
Khoai-tay-1,Electrode-Box-A,13,106,153,0
Khoai-tay-2,Naive,6,62,144,0
Khoai-tay-2,Naive,7,87,141,0
Khoai-tay-2,Naive,8,105,152,0
Khoai-tay-2,Naive,9,75,148,0
Khoai-tay-2,Naive,10,101,149,0
Khoai-tay-2,Naive,11,102,154,0
Khoai-tay-2,Naive,12,95,144,0
Khoai-tay-2,Naive,13,77,149,0
OM-2,Naive,6,73,138,0
OM-2,Naive,7,80,131,0
OM-2,Naive,8,91,141,0
OM-2,Naive,9,90,135,0
OM-2,Naive,10,95,142,0
OM-2,Naive,11,60,133,0
OM-2,Naive,12,58,142,0
Root-beer-1,Electrode-Box-B2,6,104,139,1
Root-beer-1,Electrode-Box-B2,7,98,148,1
Root-beer-1,Electrode-Box-B2,8,81,145,1
Root-beer-1,Electrode-Box-B2,9,89,156,1
Root-beer-1,Electrode-Box-B2,10,105,158,1
Vu-vuong,Naive,6,49,131,0
Vu-vuong,Naive,7,65,149,0
Vu-vuong,Naive,8,67,141,0
Vu-vuong,Naive,9,73,140,0
Vu-vuong,Naive,10,72,131,0
Vu-vuong,Naive,11,89,158,0
Vu-vuong,Naive,12,97,154,0
Vu-vuong,Naive,13,93,145,0
1 subject group day success total stim
2 Banh-mi-1 Electrode-Box-B2 6 90 131 1
3 Banh-mi-1 Electrode-Box-B2 7 109 148 1
4 Banh-mi-1 Electrode-Box-B2 8 104 137 1
5 Banh-mi-1 Electrode-Box-B2 9 119 150 1
6 Banh-mi-1 Electrode-Box-B2 10 121 158 1
7 Banh-mi-1 Electrode-Box-B2 11 121 148 1
8 Banh-mi-1 Electrode-Box-B2 12 120 149 1
9 Banh-mi-1 Electrode-Box-B2 13 135 154 1
10 Banh-mi-2 Electrode-Box-A2 6 74 146 0
11 Banh-mi-2 Electrode-Box-A2 7 70 148 0
12 Banh-mi-2 Electrode-Box-A2 8 65 130 0
13 Banh-mi-2 Electrode-Box-A2 9 79 151 0
14 Banh-mi-2 Electrode-Box-A2 10 93 152 0
15 Egg-tart-1 Electrode-Box-B2 6 71 142 1
16 Egg-tart-1 Electrode-Box-B2 7 79 138 1
17 Egg-tart-1 Electrode-Box-B2 8 98 142 1
18 Egg-tart-1 Electrode-Box-B2 9 89 139 1
19 Egg-tart-1 Electrode-Box-B2 10 96 143 1
20 Egg-tart-1 Electrode-Box-B2 11 96 148 1
21 Egg-tart-1 Electrode-Box-B2 12 101 156 1
22 Egg-tart-1 Electrode-Box-B2 13 103 152 1
23 Egg-tart-2 Electrode-Box-A2 6 85 145 0
24 Egg-tart-2 Electrode-Box-A2 7 79 143 0
25 Egg-tart-2 Electrode-Box-A2 8 76 131 0
26 Egg-tart-2 Electrode-Box-A2 9 88 149 0
27 Egg-tart-2 Electrode-Box-A2 10 81 151 0
28 Egg-tart-2 Electrode-Box-A2 11 78 152 0
29 Egg-tart-2 Electrode-Box-A2 12 96 155 0
30 Egg-tart-2 Electrode-Box-A2 13 84 155 0
31 Khoai-lang-2 Naive 6 21 72 0
32 Khoai-lang-2 Naive 7 23 99 0
33 Khoai-lang-2 Naive 8 64 136 0
34 Khoai-lang-2 Naive 9 75 131 0
35 Khoai-lang-2 Naive 10 63 134 0
36 Khoai-lang-2 Naive 11 59 139 0
37 Khoai-lang-2 Naive 12 51 129 0
38 Khoai-lang-2 Naive 13 73 143 0
39 Khoai-tay-1 Electrode-Box-A 6 81 137 0
40 Khoai-tay-1 Electrode-Box-A 7 78 147 0
41 Khoai-tay-1 Electrode-Box-A 8 91 132 0
42 Khoai-tay-1 Electrode-Box-A 9 99 146 0
43 Khoai-tay-1 Electrode-Box-A 10 94 143 0
44 Khoai-tay-1 Electrode-Box-A 11 110 156 0
45 Khoai-tay-1 Electrode-Box-A 12 105 143 0
46 Khoai-tay-1 Electrode-Box-A 13 106 153 0
47 Khoai-tay-2 Naive 6 62 144 0
48 Khoai-tay-2 Naive 7 87 141 0
49 Khoai-tay-2 Naive 8 105 152 0
50 Khoai-tay-2 Naive 9 75 148 0
51 Khoai-tay-2 Naive 10 101 149 0
52 Khoai-tay-2 Naive 11 102 154 0
53 Khoai-tay-2 Naive 12 95 144 0
54 Khoai-tay-2 Naive 13 77 149 0
55 OM-2 Naive 6 73 138 0
56 OM-2 Naive 7 80 131 0
57 OM-2 Naive 8 91 141 0
58 OM-2 Naive 9 90 135 0
59 OM-2 Naive 10 95 142 0
60 OM-2 Naive 11 60 133 0
61 OM-2 Naive 12 58 142 0
62 Root-beer-1 Electrode-Box-B2 6 104 139 1
63 Root-beer-1 Electrode-Box-B2 7 98 148 1
64 Root-beer-1 Electrode-Box-B2 8 81 145 1
65 Root-beer-1 Electrode-Box-B2 9 89 156 1
66 Root-beer-1 Electrode-Box-B2 10 105 158 1
67 Vu-vuong Naive 6 49 131 0
68 Vu-vuong Naive 7 65 149 0
69 Vu-vuong Naive 8 67 141 0
70 Vu-vuong Naive 9 73 140 0
71 Vu-vuong Naive 10 72 131 0
72 Vu-vuong Naive 11 89 158 0
73 Vu-vuong Naive 12 97 154 0
74 Vu-vuong Naive 13 93 145 0