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analysis(matlab): per-variation subfolders (grouping x window) for the paper LME

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Add make_variations.m + variation_analyze.m generating 20 self-contained
subfolders under analysis/matlab/variations/, one per grouping x day-window,
each with exactly three files: data.csv (curated subset), analyze.m (a simple
standalone script fitting behavior ~ stim + day + stim:day + (1|rat) on the
success COUNT), and result.txt (its output). Plus variations/SUMMARY.csv.

Groupings (stim=1 / stim=0, other groups dropped):
  unmerge     B2 vs A2
  right_only  B2+Right vs A2            (Box-A dropped)
  naive_a2    B2 vs A2+Naive           (Right, Box-A dropped)
  naive_boxa  B2 vs A2+Naive+Box-A     (Right dropped)
Windows: 0-10, 0-13, 0-5, 6-10, 6-13. All 20 have equal day coverage.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Experiments DB Dev
2026-07-20 20:49:54 -04:00
parent 963fd889b2
commit 969c0205e8
63 changed files with 4343 additions and 0 deletions
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analysis/matlab/variations/naive_boxa_d0_5/data.csv
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subject,group,day,success,total,stim
Banh-mi-1,Electrode-Box-B2,0,13,84,1
Banh-mi-1,Electrode-Box-B2,1,35,86,1
Banh-mi-1,Electrode-Box-B2,2,47,110,1
Banh-mi-1,Electrode-Box-B2,3,65,140,1
Banh-mi-1,Electrode-Box-B2,4,70,127,1
Banh-mi-1,Electrode-Box-B2,5,102,142,1
Banh-mi-2,Electrode-Box-A2,0,25,97,0
Banh-mi-2,Electrode-Box-A2,1,22,101,0
Banh-mi-2,Electrode-Box-A2,2,22,119,0
Banh-mi-2,Electrode-Box-A2,3,29,118,0
Banh-mi-2,Electrode-Box-A2,4,27,136,0
Banh-mi-2,Electrode-Box-A2,5,43,146,0
Egg-tart-1,Electrode-Box-B2,0,7,56,1
Egg-tart-1,Electrode-Box-B2,1,16,78,1
Egg-tart-1,Electrode-Box-B2,2,23,103,1
Egg-tart-1,Electrode-Box-B2,3,63,120,1
Egg-tart-1,Electrode-Box-B2,4,69,132,1
Egg-tart-1,Electrode-Box-B2,5,83,136,1
Egg-tart-2,Electrode-Box-A2,0,9,32,0
Egg-tart-2,Electrode-Box-A2,1,2,38,0
Egg-tart-2,Electrode-Box-A2,2,31,93,0
Egg-tart-2,Electrode-Box-A2,3,44,101,0
Egg-tart-2,Electrode-Box-A2,4,54,131,0
Egg-tart-2,Electrode-Box-A2,5,84,139,0
Khoai-lang-2,Naive,0,0,0,0
Khoai-lang-2,Naive,1,0,0,0
Khoai-lang-2,Naive,2,10,47,0
Khoai-lang-2,Naive,3,11,52,0
Khoai-lang-2,Naive,4,9,56,0
Khoai-lang-2,Naive,5,34,95,0
Khoai-tay-1,Electrode-Box-A,0,14,62,0
Khoai-tay-1,Electrode-Box-A,1,22,83,0
Khoai-tay-1,Electrode-Box-A,2,6,79,0
Khoai-tay-1,Electrode-Box-A,3,28,97,0
Khoai-tay-1,Electrode-Box-A,4,60,134,0
Khoai-tay-1,Electrode-Box-A,5,75,138,0
Khoai-tay-2,Naive,1,21,68,0
Khoai-tay-2,Naive,2,6,79,0
Khoai-tay-2,Naive,3,0,83,0
Khoai-tay-2,Naive,4,28,87,0
Khoai-tay-2,Naive,5,31,125,0
OM-2,Naive,0,1,7,0
OM-2,Naive,1,11,33,0
OM-2,Naive,2,19,62,0
OM-2,Naive,3,29,117,0
OM-2,Naive,4,73,126,0
OM-2,Naive,5,53,135,0
Root-beer-1,Electrode-Box-B2,0,11,85,1
Root-beer-1,Electrode-Box-B2,1,18,76,1
Root-beer-1,Electrode-Box-B2,2,40,105,1
Root-beer-1,Electrode-Box-B2,3,55,134,1
Root-beer-1,Electrode-Box-B2,4,75,136,1
Root-beer-1,Electrode-Box-B2,5,64,133,1
Root-beer-2,Electrode-Box-A2,0,22,74,0
Root-beer-2,Electrode-Box-A2,1,31,87,0
Root-beer-2,Electrode-Box-A2,2,49,134,0
Root-beer-2,Electrode-Box-A2,3,31,89,0
Root-beer-2,Electrode-Box-A2,4,60,140,0
Root-beer-2,Electrode-Box-A2,5,84,147,0
Vu-vuong,Naive,0,18,61,0
Vu-vuong,Naive,1,35,91,0
Vu-vuong,Naive,2,61,127,0
Vu-vuong,Naive,3,34,146,0
Vu-vuong,Naive,4,61,141,0
Vu-vuong,Naive,5,37,151,0
1 subject group day success total stim
2 Banh-mi-1 Electrode-Box-B2 0 13 84 1
3 Banh-mi-1 Electrode-Box-B2 1 35 86 1
4 Banh-mi-1 Electrode-Box-B2 2 47 110 1
5 Banh-mi-1 Electrode-Box-B2 3 65 140 1
6 Banh-mi-1 Electrode-Box-B2 4 70 127 1
7 Banh-mi-1 Electrode-Box-B2 5 102 142 1
8 Banh-mi-2 Electrode-Box-A2 0 25 97 0
9 Banh-mi-2 Electrode-Box-A2 1 22 101 0
10 Banh-mi-2 Electrode-Box-A2 2 22 119 0
11 Banh-mi-2 Electrode-Box-A2 3 29 118 0
12 Banh-mi-2 Electrode-Box-A2 4 27 136 0
13 Banh-mi-2 Electrode-Box-A2 5 43 146 0
14 Egg-tart-1 Electrode-Box-B2 0 7 56 1
15 Egg-tart-1 Electrode-Box-B2 1 16 78 1
16 Egg-tart-1 Electrode-Box-B2 2 23 103 1
17 Egg-tart-1 Electrode-Box-B2 3 63 120 1
18 Egg-tart-1 Electrode-Box-B2 4 69 132 1
19 Egg-tart-1 Electrode-Box-B2 5 83 136 1
20 Egg-tart-2 Electrode-Box-A2 0 9 32 0
21 Egg-tart-2 Electrode-Box-A2 1 2 38 0
22 Egg-tart-2 Electrode-Box-A2 2 31 93 0
23 Egg-tart-2 Electrode-Box-A2 3 44 101 0
24 Egg-tart-2 Electrode-Box-A2 4 54 131 0
25 Egg-tart-2 Electrode-Box-A2 5 84 139 0
26 Khoai-lang-2 Naive 0 0 0 0
27 Khoai-lang-2 Naive 1 0 0 0
28 Khoai-lang-2 Naive 2 10 47 0
29 Khoai-lang-2 Naive 3 11 52 0
30 Khoai-lang-2 Naive 4 9 56 0
31 Khoai-lang-2 Naive 5 34 95 0
32 Khoai-tay-1 Electrode-Box-A 0 14 62 0
33 Khoai-tay-1 Electrode-Box-A 1 22 83 0
34 Khoai-tay-1 Electrode-Box-A 2 6 79 0
35 Khoai-tay-1 Electrode-Box-A 3 28 97 0
36 Khoai-tay-1 Electrode-Box-A 4 60 134 0
37 Khoai-tay-1 Electrode-Box-A 5 75 138 0
38 Khoai-tay-2 Naive 1 21 68 0
39 Khoai-tay-2 Naive 2 6 79 0
40 Khoai-tay-2 Naive 3 0 83 0
41 Khoai-tay-2 Naive 4 28 87 0
42 Khoai-tay-2 Naive 5 31 125 0
43 OM-2 Naive 0 1 7 0
44 OM-2 Naive 1 11 33 0
45 OM-2 Naive 2 19 62 0
46 OM-2 Naive 3 29 117 0
47 OM-2 Naive 4 73 126 0
48 OM-2 Naive 5 53 135 0
49 Root-beer-1 Electrode-Box-B2 0 11 85 1
50 Root-beer-1 Electrode-Box-B2 1 18 76 1
51 Root-beer-1 Electrode-Box-B2 2 40 105 1
52 Root-beer-1 Electrode-Box-B2 3 55 134 1
53 Root-beer-1 Electrode-Box-B2 4 75 136 1
54 Root-beer-1 Electrode-Box-B2 5 64 133 1
55 Root-beer-2 Electrode-Box-A2 0 22 74 0
56 Root-beer-2 Electrode-Box-A2 1 31 87 0
57 Root-beer-2 Electrode-Box-A2 2 49 134 0
58 Root-beer-2 Electrode-Box-A2 3 31 89 0
59 Root-beer-2 Electrode-Box-A2 4 60 140 0
60 Root-beer-2 Electrode-Box-A2 5 84 147 0
61 Vu-vuong Naive 0 18 61 0
62 Vu-vuong Naive 1 35 91 0
63 Vu-vuong Naive 2 61 127 0
64 Vu-vuong Naive 3 34 146 0
65 Vu-vuong Naive 4 61 141 0
66 Vu-vuong Naive 5 37 151 0