Experiments DB Dev
e730aa0020
Adds tdcs_phase_lme (same LME refit within learning phases 0-5/6-10/6-13, with per-phase slopes + interaction 95% CI) as phase_* switch cases, and tdcs_power_sim (Monte-Carlo power for the early-phase interaction, scored by the cluster-honest per-animal test and the LME test) + run_power. Findings: the Box-B2 faster-acquisition signal is in the early phase; at n=3-5/group honest power is 0.3-0.7 even at the observed effect (need ~8/group if effect is as observed, ~20/group if half). Adds tPhasePower tests. Suite 35/35. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
120 lines
4.5 KiB
Matlab
120 lines
4.5 KiB
Matlab
function tdcs_glm(scenario)
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%TDCS_GLM Run one tDCS GLM scenario end-to-end and report it.
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% TDCS_GLM(SCENARIO) runs the full pipeline for one named scenario --
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% TDCS_SCENARIO_DATA -> TDCS_MODELS -> TDCS_REPORT -- printing the
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% report to the console and writing it to
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% analysis/matlab/results/<SCENARIO>.txt.
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%
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% SCENARIO must be one of (case-sensitive):
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% unmerged_full, unmerged_d0_10,
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% mergeA2_full, mergeA2_d0_10,
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% mergeB2_full, mergeB2_d0_10
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% or a linear "days x tDCS" mixed model (Box-B2 vs Box-A2, per the paper):
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% lme_unmerged_full, lme_unmerged_d0_10, lme_unmerged_d0_13,
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% lme_mergeA2_full, lme_mergeA2_d0_10, lme_mergeA2_d0_13,
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% lme_mergeB2_full, lme_mergeB2_d0_10, lme_mergeB2_d0_13
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% The _d0_13 window ends where Box-A2 runs out of data, giving both anchor
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% groups equal day coverage (the fair window for the interaction).
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%
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% Each case below is a self-contained, independently invocable call of
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% the same three-function pipeline; they are enumerated explicitly
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% (rather than sharing one generic branch) so each scenario name is
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% greppable on its own, per the project's spec.
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%
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% Example:
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% tdcs_glm('mergeB2_full')
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%
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% See analysis/tdcs_glm.py (the Python this ports) and
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% docs/superpowers/plans/2026-07-20-matlab-tdcs-analysis.md (Task 4).
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cfg = tdcs_config();
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switch scenario
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case 'unmerged_full'
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[S, meta] = tdcs_scenario_data('unmerged_full');
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R = tdcs_models(S, meta, cfg);
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tdcs_report(S, R, meta, cfg, 'unmerged_full');
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case 'unmerged_d0_10'
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[S, meta] = tdcs_scenario_data('unmerged_d0_10');
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R = tdcs_models(S, meta, cfg);
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tdcs_report(S, R, meta, cfg, 'unmerged_d0_10');
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case 'mergeA2_full'
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[S, meta] = tdcs_scenario_data('mergeA2_full');
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R = tdcs_models(S, meta, cfg);
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tdcs_report(S, R, meta, cfg, 'mergeA2_full');
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case 'mergeA2_d0_10'
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[S, meta] = tdcs_scenario_data('mergeA2_d0_10');
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R = tdcs_models(S, meta, cfg);
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tdcs_report(S, R, meta, cfg, 'mergeA2_d0_10');
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case 'mergeB2_full'
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[S, meta] = tdcs_scenario_data('mergeB2_full');
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R = tdcs_models(S, meta, cfg);
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tdcs_report(S, R, meta, cfg, 'mergeB2_full');
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case 'mergeB2_d0_10'
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[S, meta] = tdcs_scenario_data('mergeB2_d0_10');
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R = tdcs_models(S, meta, cfg);
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tdcs_report(S, R, meta, cfg, 'mergeB2_d0_10');
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% --- Linear "days x tDCS" mixed model (Box-B2 vs Box-A2), per the paper ---
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case 'lme_unmerged_full'
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L = tdcs_lme(tdcs_scenario_data('unmerged_full'), cfg);
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tdcs_lme_report(L, 'lme_unmerged_full', cfg);
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case 'lme_unmerged_d0_10'
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L = tdcs_lme(tdcs_scenario_data('unmerged_d0_10'), cfg);
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tdcs_lme_report(L, 'lme_unmerged_d0_10', cfg);
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case 'lme_mergeA2_full'
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L = tdcs_lme(tdcs_scenario_data('mergeA2_full'), cfg);
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tdcs_lme_report(L, 'lme_mergeA2_full', cfg);
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case 'lme_mergeA2_d0_10'
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L = tdcs_lme(tdcs_scenario_data('mergeA2_d0_10'), cfg);
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tdcs_lme_report(L, 'lme_mergeA2_d0_10', cfg);
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case 'lme_mergeB2_full'
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L = tdcs_lme(tdcs_scenario_data('mergeB2_full'), cfg);
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tdcs_lme_report(L, 'lme_mergeB2_full', cfg);
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case 'lme_mergeB2_d0_10'
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L = tdcs_lme(tdcs_scenario_data('mergeB2_d0_10'), cfg);
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tdcs_lme_report(L, 'lme_mergeB2_d0_10', cfg);
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case 'lme_unmerged_d0_13'
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L = tdcs_lme(tdcs_scenario_data('unmerged_d0_13'), cfg);
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tdcs_lme_report(L, 'lme_unmerged_d0_13', cfg);
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case 'lme_mergeA2_d0_13'
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L = tdcs_lme(tdcs_scenario_data('mergeA2_d0_13'), cfg);
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tdcs_lme_report(L, 'lme_mergeA2_d0_13', cfg);
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case 'lme_mergeB2_d0_13'
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L = tdcs_lme(tdcs_scenario_data('mergeB2_d0_13'), cfg);
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tdcs_lme_report(L, 'lme_mergeB2_d0_13', cfg);
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% --- Phased days x tDCS LME (fast/slow learning phases), Box-B2 vs Box-A2 ---
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case 'phase_unmerged'
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tdcs_phase_lme('unmerged', cfg);
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case 'phase_mergeA2'
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tdcs_phase_lme('mergeA2', cfg);
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case 'phase_mergeB2'
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tdcs_phase_lme('mergeB2', cfg);
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otherwise
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error('tdcs_glm:badScenario', ...
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['Unrecognized scenario "%s". Valid scenarios are: ' ...
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'unmerged_full, unmerged_d0_10, mergeA2_full, mergeA2_d0_10, ' ...
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'mergeB2_full, mergeB2_d0_10, their lme_* variants ' ...
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'(lme_unmerged_full, ..., lme_mergeB2_d0_13), and the phased LMEs ' ...
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'phase_unmerged, phase_mergeA2, phase_mergeB2.'], scenario);
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end
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end
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