Experiments DB Dev
7b5c27df8c
Adds tdcs_paper_lme replicating the paper's exact formula/variable names (paper_* switch cases): mergeA2 reproduces the interaction F(1)=7.09 vs 7.12, p=0.009 vs 0.008, with a coverage-confound warning. Rewrites tdcs_power_sim to fit that same formula (interaction term canonicalized to day:stim). Adds a replication test. Suite 37/37. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
130 lines
4.7 KiB
Matlab
130 lines
4.7 KiB
Matlab
function tdcs_glm(scenario)
|
|
%TDCS_GLM Run one tDCS GLM scenario end-to-end and report it.
|
|
% TDCS_GLM(SCENARIO) runs the full pipeline for one named scenario --
|
|
% TDCS_SCENARIO_DATA -> TDCS_MODELS -> TDCS_REPORT -- printing the
|
|
% report to the console and writing it to
|
|
% analysis/matlab/results/<SCENARIO>.txt.
|
|
%
|
|
% SCENARIO must be one of (case-sensitive):
|
|
% unmerged_full, unmerged_d0_10,
|
|
% mergeA2_full, mergeA2_d0_10,
|
|
% mergeB2_full, mergeB2_d0_10
|
|
% or a linear "days x tDCS" mixed model (Box-B2 vs Box-A2, per the paper):
|
|
% lme_unmerged_full, lme_unmerged_d0_10, lme_unmerged_d0_13,
|
|
% lme_mergeA2_full, lme_mergeA2_d0_10, lme_mergeA2_d0_13,
|
|
% lme_mergeB2_full, lme_mergeB2_d0_10, lme_mergeB2_d0_13
|
|
% The _d0_13 window ends where Box-A2 runs out of data, giving both anchor
|
|
% groups equal day coverage (the fair window for the interaction).
|
|
%
|
|
% Each case below is a self-contained, independently invocable call of
|
|
% the same three-function pipeline; they are enumerated explicitly
|
|
% (rather than sharing one generic branch) so each scenario name is
|
|
% greppable on its own, per the project's spec.
|
|
%
|
|
% Example:
|
|
% tdcs_glm('mergeB2_full')
|
|
%
|
|
% See analysis/tdcs_glm.py (the Python this ports) and
|
|
% docs/superpowers/plans/2026-07-20-matlab-tdcs-analysis.md (Task 4).
|
|
|
|
cfg = tdcs_config();
|
|
|
|
switch scenario
|
|
case 'unmerged_full'
|
|
[S, meta] = tdcs_scenario_data('unmerged_full');
|
|
R = tdcs_models(S, meta, cfg);
|
|
tdcs_report(S, R, meta, cfg, 'unmerged_full');
|
|
|
|
case 'unmerged_d0_10'
|
|
[S, meta] = tdcs_scenario_data('unmerged_d0_10');
|
|
R = tdcs_models(S, meta, cfg);
|
|
tdcs_report(S, R, meta, cfg, 'unmerged_d0_10');
|
|
|
|
case 'mergeA2_full'
|
|
[S, meta] = tdcs_scenario_data('mergeA2_full');
|
|
R = tdcs_models(S, meta, cfg);
|
|
tdcs_report(S, R, meta, cfg, 'mergeA2_full');
|
|
|
|
case 'mergeA2_d0_10'
|
|
[S, meta] = tdcs_scenario_data('mergeA2_d0_10');
|
|
R = tdcs_models(S, meta, cfg);
|
|
tdcs_report(S, R, meta, cfg, 'mergeA2_d0_10');
|
|
|
|
case 'mergeB2_full'
|
|
[S, meta] = tdcs_scenario_data('mergeB2_full');
|
|
R = tdcs_models(S, meta, cfg);
|
|
tdcs_report(S, R, meta, cfg, 'mergeB2_full');
|
|
|
|
case 'mergeB2_d0_10'
|
|
[S, meta] = tdcs_scenario_data('mergeB2_d0_10');
|
|
R = tdcs_models(S, meta, cfg);
|
|
tdcs_report(S, R, meta, cfg, 'mergeB2_d0_10');
|
|
|
|
% --- Linear "days x tDCS" mixed model (Box-B2 vs Box-A2), per the paper ---
|
|
case 'lme_unmerged_full'
|
|
L = tdcs_lme(tdcs_scenario_data('unmerged_full'), cfg);
|
|
tdcs_lme_report(L, 'lme_unmerged_full', cfg);
|
|
|
|
case 'lme_unmerged_d0_10'
|
|
L = tdcs_lme(tdcs_scenario_data('unmerged_d0_10'), cfg);
|
|
tdcs_lme_report(L, 'lme_unmerged_d0_10', cfg);
|
|
|
|
case 'lme_mergeA2_full'
|
|
L = tdcs_lme(tdcs_scenario_data('mergeA2_full'), cfg);
|
|
tdcs_lme_report(L, 'lme_mergeA2_full', cfg);
|
|
|
|
case 'lme_mergeA2_d0_10'
|
|
L = tdcs_lme(tdcs_scenario_data('mergeA2_d0_10'), cfg);
|
|
tdcs_lme_report(L, 'lme_mergeA2_d0_10', cfg);
|
|
|
|
case 'lme_mergeB2_full'
|
|
L = tdcs_lme(tdcs_scenario_data('mergeB2_full'), cfg);
|
|
tdcs_lme_report(L, 'lme_mergeB2_full', cfg);
|
|
|
|
case 'lme_mergeB2_d0_10'
|
|
L = tdcs_lme(tdcs_scenario_data('mergeB2_d0_10'), cfg);
|
|
tdcs_lme_report(L, 'lme_mergeB2_d0_10', cfg);
|
|
|
|
case 'lme_unmerged_d0_13'
|
|
L = tdcs_lme(tdcs_scenario_data('unmerged_d0_13'), cfg);
|
|
tdcs_lme_report(L, 'lme_unmerged_d0_13', cfg);
|
|
|
|
case 'lme_mergeA2_d0_13'
|
|
L = tdcs_lme(tdcs_scenario_data('mergeA2_d0_13'), cfg);
|
|
tdcs_lme_report(L, 'lme_mergeA2_d0_13', cfg);
|
|
|
|
case 'lme_mergeB2_d0_13'
|
|
L = tdcs_lme(tdcs_scenario_data('mergeB2_d0_13'), cfg);
|
|
tdcs_lme_report(L, 'lme_mergeB2_d0_13', cfg);
|
|
|
|
% --- Phased days x tDCS LME (fast/slow learning phases), Box-B2 vs Box-A2 ---
|
|
case 'phase_unmerged'
|
|
tdcs_phase_lme('unmerged', cfg);
|
|
|
|
case 'phase_mergeA2'
|
|
tdcs_phase_lme('mergeA2', cfg);
|
|
|
|
case 'phase_mergeB2'
|
|
tdcs_phase_lme('mergeB2', cfg);
|
|
|
|
% --- Paper replication: behavior ~ stim + day + stim:day + (1|rat) ---
|
|
case 'paper_unmerged'
|
|
tdcs_paper_lme('unmerged', cfg);
|
|
|
|
case 'paper_mergeA2'
|
|
tdcs_paper_lme('mergeA2', cfg);
|
|
|
|
case 'paper_mergeB2'
|
|
tdcs_paper_lme('mergeB2', cfg);
|
|
|
|
otherwise
|
|
error('tdcs_glm:badScenario', ...
|
|
['Unrecognized scenario "%s". Valid scenarios are: ' ...
|
|
'unmerged_full, unmerged_d0_10, mergeA2_full, mergeA2_d0_10, ' ...
|
|
'mergeB2_full, mergeB2_d0_10, their lme_* variants ' ...
|
|
'(lme_unmerged_full, ..., lme_mergeB2_d0_13), and the phased LMEs ' ...
|
|
'phase_unmerged, phase_mergeA2, phase_mergeB2.'], scenario);
|
|
end
|
|
|
|
end
|