Experiments DB Dev
77b631bcac
Adds cfg.mergeNaive and scenario/paper/phase/power support. This pooled grouping is the closest replication of the paper's full pattern: paper LME interaction F(1)=7.30, p=0.008 (paper 7.12/0.008), stim main n.s. (p=0.21 = equal on Day 1), strong day effect; the overall tDCS advantage is significant at the cluster-honest per-animal level (rate p=0.003) and well powered. Adds a grouping test. Suite 38/38. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
65 lines
2.7 KiB
Matlab
65 lines
2.7 KiB
Matlab
function cfg = tdcs_config()
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%TDCS_CONFIG Curated group map and merge maps for the tDCS reaching study.
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% CFG = TDCS_CONFIG() returns a struct with:
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% .groups containers.Map, subject name (char) -> curated group name
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% (char), for the 12 curated animals only. All other
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% animals present in the raw export are not in this map
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% and must be dropped by callers.
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% .ref reference group used to code the GLME group factor,
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% 'Electrode-Box-B2'.
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% .mergeA2 containers.Map collapsing the two UNKNOWN conditions
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% toward the weaker anchor: Electrode-Box-A ->
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% Electrode-Box-A2, Right-Electrode -> Electrode-Box-B2.
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% .mergeB2 containers.Map collapsing both UNKNOWN conditions onto
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% the stronger anchor: Electrode-Box-A -> Electrode-Box-B2,
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% Right-Electrode -> Electrode-Box-B2.
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% .anchorLow 'Electrode-Box-A2', the weaker of the two known anchors.
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% .anchorHigh 'Electrode-Box-B2', the stronger known anchor (== ref).
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% .unknowns cell array of the two ungrouped conditions that get
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% classified against the two anchors: {'Electrode-Box-A',
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% 'Right-Electrode'}.
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%
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% See docs/superpowers/plans/2026-07-20-matlab-tdcs-analysis.md (Global
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% Constraints) for the source of these values.
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% Curated 12-animal group map (by animal name).
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subjectGroup = {
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'Vu-vuong', 'Naive'
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'Khoai-lang-2', 'Naive'
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'Khoai-tay-2', 'Naive'
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'OM-2', 'Naive'
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'Khoai-tay-1', 'Electrode-Box-A'
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'Banh-mi-2', 'Electrode-Box-A2'
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'Egg-tart-2', 'Electrode-Box-A2'
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'Root-beer-2', 'Electrode-Box-A2'
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'Banh-mi-1', 'Electrode-Box-B2'
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'Egg-tart-1', 'Electrode-Box-B2'
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'Root-beer-1', 'Electrode-Box-B2'
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'Khoai-lang-1', 'Right-Electrode'
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};
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cfg = struct();
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cfg.groups = containers.Map(subjectGroup(:, 1), subjectGroup(:, 2));
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cfg.ref = 'Electrode-Box-B2';
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cfg.anchorLow = 'Electrode-Box-A2';
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cfg.anchorHigh = 'Electrode-Box-B2';
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cfg.unknowns = {'Electrode-Box-A', 'Right-Electrode'};
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cfg.mergeA2 = containers.Map( ...
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{'Electrode-Box-A', 'Right-Electrode'}, ...
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{'Electrode-Box-A2', 'Electrode-Box-B2'});
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cfg.mergeB2 = containers.Map( ...
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{'Electrode-Box-A', 'Right-Electrode'}, ...
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{'Electrode-Box-B2', 'Electrode-Box-B2'});
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% mergeNaive: pool Naive into the Box-A2 (control) side and Right-Electrode
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% into the Box-B2 (tDCS) side. Control = Box-A2 + Naive (n=7), tDCS = Box-B2 +
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% Right-Electrode (n=4); Electrode-Box-A is left unchanged.
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cfg.mergeNaive = containers.Map( ...
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{'Naive', 'Right-Electrode'}, ...
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{'Electrode-Box-A2', 'Electrode-Box-B2'});
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end
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