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Experiments DB Dev 8a18c894dd feat(matlab): add Satterthwaite DF + honest random-slope test to LME reports
Every fitlme-based report (lme_*, paper_*, phase_*, and the variations'
analyze.m) now shows, per effect: residual-DF p, Satterthwaite-DF p, and --
for the interaction -- an HONEST test from a per-animal random-SLOPE model
(day|rat), whose Satterthwaite DF collapses toward the animal count.

New: tdcs_random_slope_interaction.m (shared helper). Wired into tdcs_lme,
tdcs_paper_lme, tdcs_phase_lme, variation_analyze; SUMMARY.csv gains
interaction_p_satt / interaction_p_rs. Regenerated all results/, variations/,
matched-effort outputs.

Key point this surfaces: Satterthwaite ~= residual on the random-INTERCEPT
model (the slope's error is at session level), so it does NOT fix
pseudoreplication; the random-slope model does. Effect: full-range mergeA2
interaction 0.009 -> 0.75 (collapses); unmerge_d0_5 0.015 -> 0.13 (n.s.);
the pooled-control early windows survive honestly (naive_a2_d0_5 0.001 ->
0.028; naive_boxa_d0_5 0.003 -> 0.036). Suite 42/42.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-22 15:45:19 -04:00

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#!/usr/bin/env bash
# =============================================================================
# Installs (or updates) cron entries for the experiments DB backup.
# Safe to run multiple times — replaces existing ExpDB entries.
# =============================================================================
SCRIPT="$(cd "$(dirname "$0")" && pwd)/backup.sh"
if [[ ! -x "$SCRIPT" ]]; then
chmod +x "$SCRIPT"
fi
# Remove any previous ExpDB backup lines, then append fresh ones
TMPFILE=$(mktemp)
crontab -l 2>/dev/null | grep -v "# ExpDB-backup" > "$TMPFILE" || true
cat >> "$TMPFILE" <<EOF
# ExpDB-backup — daily change-detect backup at 02:00
0 2 * * * $SCRIPT daily >> /home/sam/synology/Backups/Experiments-DB-Backup/backup.log 2>&1 # ExpDB-backup
# ExpDB-backup — weekly unconditional backup every Sunday at 03:00
0 3 * * 0 $SCRIPT weekly >> /home/sam/synology/Backups/Experiments-DB-Backup/backup.log 2>&1 # ExpDB-backup
EOF
crontab "$TMPFILE"
rm -f "$TMPFILE"
echo "Cron entries installed:"
crontab -l | grep "ExpDB-backup"