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feat(matlab): add Satterthwaite DF + honest random-slope test to LME reports

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Every fitlme-based report (lme_*, paper_*, phase_*, and the variations'
analyze.m) now shows, per effect: residual-DF p, Satterthwaite-DF p, and --
for the interaction -- an HONEST test from a per-animal random-SLOPE model
(day|rat), whose Satterthwaite DF collapses toward the animal count.

New: tdcs_random_slope_interaction.m (shared helper). Wired into tdcs_lme,
tdcs_paper_lme, tdcs_phase_lme, variation_analyze; SUMMARY.csv gains
interaction_p_satt / interaction_p_rs. Regenerated all results/, variations/,
matched-effort outputs.

Key point this surfaces: Satterthwaite ~= residual on the random-INTERCEPT
model (the slope's error is at session level), so it does NOT fix
pseudoreplication; the random-slope model does. Effect: full-range mergeA2
interaction 0.009 -> 0.75 (collapses); unmerge_d0_5 0.015 -> 0.13 (n.s.);
the pooled-control early windows survive honestly (naive_a2_d0_5 0.001 ->
0.028; naive_boxa_d0_5 0.003 -> 0.036). Suite 42/42.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Experiments DB Dev
2026-07-22 15:45:19 -04:00
parent 5fcd97f81a
commit 8a18c894dd
77 changed files with 2066 additions and 345 deletions
Download Patch File Download Diff File Expand all files Collapse all files
analysis/matlab/variations/SUMMARY.csv
+21 -21
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@@ -1,21 +1,21 @@
variation,grouping,window,nRats,nObs,covEqual,interaction_p,interaction_est,stim_p,day_p
unmerge_d0_10,unmerge,d0_10,6,61,1,0.142831730250263,1.55766564374789,0.497389134925754,2.83166776054496e-14
unmerge_d0_13,unmerge,d0_13,6,70,1,0.1037612192755,1.54665472676189,0.343602740986316,3.0346358823857e-13
unmerge_d0_5,unmerge,d0_5,6,36,1,0.015149263054839,5.36190476190475,0.688839435920596,1.57055423419133e-07
unmerge_d6_10,unmerge,d6_10,5,25,1,0.485980598616448,1.76666666666666,0.0975215172907211,0.227259314093653
unmerge_d6_13,unmerge,d6_13,5,34,1,0.0971009786566259,2.26696773140328,0.101395665857404,0.117493504965036
right_only_d0_10,right_only,d0_10,7,72,1,0.072180139606096,1.73004431141938,0.715879551990348,5.94289273347193e-16
right_only_d0_13,right_only,d0_13,7,84,1,0.0480416099228058,1.7001712792199,0.528517264593511,1.17078898575779e-14
right_only_d0_5,right_only,d0_5,7,42,1,0.00589730538358453,5.30714285714286,0.469556667463413,1.45827052706827e-08
right_only_d6_10,right_only,d6_10,6,30,1,0.288979620167748,2.425,0.119238243812818,0.200957769624237
right_only_d6_13,right_only,d6_13,6,42,1,0.0258497485171371,2.75792254325755,0.109557181635453,0.0976080018855909
naive_a2_d0_10,naive_a2,d0_10,10,104,1,0.125891264174292,1.43371876298297,0.141836960529428,1.59796354184479e-27
naive_a2_d0_13,naive_a2,d0_13,10,124,1,0.0397967517409217,1.61366204723722,0.153633906173184,2.5469330031931e-28
naive_a2_d0_5,naive_a2,d0_5,10,59,1,0.00107331575782455,6.96223661591522,0.960550975833492,1.1254222201539e-09
naive_a2_d6_10,naive_a2,d6_10,9,45,1,0.449922139297732,-1.8,0.00929038977362001,8.02730473236241e-05
naive_a2_d6_13,naive_a2,d6_13,9,65,1,0.439759713746994,1.15527349799111,0.0165675905421826,0.00123453301903328
naive_boxa_d0_10,naive_boxa,d0_10,11,115,1,0.194116831474294,1.17792772470162,0.124842156542362,1.7431506758907e-32
naive_boxa_d0_13,naive_boxa,d0_13,11,138,1,0.0848056366333164,1.30637615965008,0.140502409490992,1.21292542612342e-34
naive_boxa_d0_5,naive_boxa,d0_5,11,65,1,0.00254470765200637,6.40329932104724,0.881419104187055,2.50618640106882e-11
naive_boxa_d6_10,naive_boxa,d6_10,10,50,1,0.46817073850354,-1.61904761904762,0.014689379915428,1.87688778586107e-05
naive_boxa_d6_13,naive_boxa,d6_13,10,73,1,0.530807487326757,0.873689202983884,0.0303916991304334,6.44631091768978e-05
variation,grouping,window,nRats,nObs,covEqual,interaction_p,interaction_p_satt,interaction_p_rs,interaction_est,stim_p,day_p
unmerge_d0_10,unmerge,d0_10,6,61,1,0.142831730250263,0.142797566084653,0.247946685371652,1.55766564374789,0.497389134925754,2.83166776054496e-14
unmerge_d0_13,unmerge,d0_13,6,70,1,0.1037612192755,0.103490077847449,0.222686826261486,1.54665472676189,0.343602740986316,3.0346358823857e-13
unmerge_d0_5,unmerge,d0_5,6,36,1,0.015149263054839,0.0154996899553134,0.133145634512884,5.36190476190475,0.688839435920596,1.57055423419133e-07
unmerge_d6_10,unmerge,d6_10,5,25,1,0.485980598616448,0.486366669144796,0.554919025308352,1.76666666666666,0.0975215172907211,0.227259314093653
unmerge_d6_13,unmerge,d6_13,5,34,1,0.0971009786566259,0.0970128901807668,0.13816578257917,2.26696773140328,0.101395665857404,0.117493504965036
right_only_d0_10,right_only,d0_10,7,72,1,0.072180139606096,0.0721794737454714,0.124574209202325,1.73004431141938,0.715879551990348,5.94289273347193e-16
right_only_d0_13,right_only,d0_13,7,84,1,0.0480416099228058,0.0478799998667326,0.102857124294903,1.7001712792199,0.528517264593511,1.17078898575779e-14
right_only_d0_5,right_only,d0_5,7,42,1,0.00589730538358453,0.00612750828678172,0.0876259332262465,5.30714285714286,0.469556667463413,1.45827052706827e-08
right_only_d6_10,right_only,d6_10,6,30,1,0.288979620167748,0.289798539517805,0.378365014630273,2.425,0.119238243812818,0.200957769624237
right_only_d6_13,right_only,d6_13,6,42,1,0.0258497485171371,0.0259134063416617,0.0369743190514673,2.75792254325755,0.109557181635453,0.0976080018855909
naive_a2_d0_10,naive_a2,d0_10,10,104,1,0.125891264174292,0.126071775330177,0.30932733005532,1.43371876298297,0.141836960529428,1.59796354184479e-27
naive_a2_d0_13,naive_a2,d0_13,10,124,1,0.0397967517409217,0.0398599319703312,0.0578149015961064,1.61366204723722,0.153633906173184,2.5469330031931e-28
naive_a2_d0_5,naive_a2,d0_5,10,59,1,0.00107331575782455,0.00115218904921896,0.028152310883297,6.96223661591522,0.960550975833492,1.1254222201539e-09
naive_a2_d6_10,naive_a2,d6_10,9,45,1,0.449922139297732,0.450525162691322,0.522263670801849,-1.8,0.00929038977362001,8.02730473236241e-05
naive_a2_d6_13,naive_a2,d6_13,9,65,1,0.439759713746994,0.439915577313227,0.563543413702517,1.15527349799111,0.0165675905421826,0.00123453301903328
naive_boxa_d0_10,naive_boxa,d0_10,11,115,1,0.194116831474294,0.194284662755081,0.383551190839722,1.17792772470162,0.124842156542362,1.7431506758907e-32
naive_boxa_d0_13,naive_boxa,d0_13,11,138,1,0.0848056366333164,0.0848864932608599,0.140324990567599,1.30637615965008,0.140502409490992,1.21292542612342e-34
naive_boxa_d0_5,naive_boxa,d0_5,11,65,1,0.00254470765200637,0.00267934065308424,0.0356145839564805,6.40329932104724,0.881419104187055,2.50618640106882e-11
naive_boxa_d6_10,naive_boxa,d6_10,10,50,1,0.46817073850354,0.468724498567948,0.534407300553877,-1.61904761904762,0.014689379915428,1.87688778586107e-05
naive_boxa_d6_13,naive_boxa,d6_13,10,73,1,0.530807487326757,0.530942127564996,0.696589180707779,0.873689202983884,0.0303916991304334,6.44631091768978e-05
1 variation grouping window nRats nObs covEqual interaction_p interaction_p_satt interaction_p_rs interaction_est stim_p day_p
2 unmerge_d0_10 unmerge d0_10 6 61 1 0.142831730250263 0.142797566084653 0.247946685371652 1.55766564374789 0.497389134925754 2.83166776054496e-14
3 unmerge_d0_13 unmerge d0_13 6 70 1 0.1037612192755 0.103490077847449 0.222686826261486 1.54665472676189 0.343602740986316 3.0346358823857e-13
4 unmerge_d0_5 unmerge d0_5 6 36 1 0.015149263054839 0.0154996899553134 0.133145634512884 5.36190476190475 0.688839435920596 1.57055423419133e-07
5 unmerge_d6_10 unmerge d6_10 5 25 1 0.485980598616448 0.486366669144796 0.554919025308352 1.76666666666666 0.0975215172907211 0.227259314093653
6 unmerge_d6_13 unmerge d6_13 5 34 1 0.0971009786566259 0.0970128901807668 0.13816578257917 2.26696773140328 0.101395665857404 0.117493504965036
7 right_only_d0_10 right_only d0_10 7 72 1 0.072180139606096 0.0721794737454714 0.124574209202325 1.73004431141938 0.715879551990348 5.94289273347193e-16
8 right_only_d0_13 right_only d0_13 7 84 1 0.0480416099228058 0.0478799998667326 0.102857124294903 1.7001712792199 0.528517264593511 1.17078898575779e-14
9 right_only_d0_5 right_only d0_5 7 42 1 0.00589730538358453 0.00612750828678172 0.0876259332262465 5.30714285714286 0.469556667463413 1.45827052706827e-08
10 right_only_d6_10 right_only d6_10 6 30 1 0.288979620167748 0.289798539517805 0.378365014630273 2.425 0.119238243812818 0.200957769624237
11 right_only_d6_13 right_only d6_13 6 42 1 0.0258497485171371 0.0259134063416617 0.0369743190514673 2.75792254325755 0.109557181635453 0.0976080018855909
12 naive_a2_d0_10 naive_a2 d0_10 10 104 1 0.125891264174292 0.126071775330177 0.30932733005532 1.43371876298297 0.141836960529428 1.59796354184479e-27
13 naive_a2_d0_13 naive_a2 d0_13 10 124 1 0.0397967517409217 0.0398599319703312 0.0578149015961064 1.61366204723722 0.153633906173184 2.5469330031931e-28
14 naive_a2_d0_5 naive_a2 d0_5 10 59 1 0.00107331575782455 0.00115218904921896 0.028152310883297 6.96223661591522 0.960550975833492 1.1254222201539e-09
15 naive_a2_d6_10 naive_a2 d6_10 9 45 1 0.449922139297732 0.450525162691322 0.522263670801849 -1.8 0.00929038977362001 8.02730473236241e-05
16 naive_a2_d6_13 naive_a2 d6_13 9 65 1 0.439759713746994 0.439915577313227 0.563543413702517 1.15527349799111 0.0165675905421826 0.00123453301903328
17 naive_boxa_d0_10 naive_boxa d0_10 11 115 1 0.194116831474294 0.194284662755081 0.383551190839722 1.17792772470162 0.124842156542362 1.7431506758907e-32
18 naive_boxa_d0_13 naive_boxa d0_13 11 138 1 0.0848056366333164 0.0848864932608599 0.140324990567599 1.30637615965008 0.140502409490992 1.21292542612342e-34
19 naive_boxa_d0_5 naive_boxa d0_5 11 65 1 0.00254470765200637 0.00267934065308424 0.0356145839564805 6.40329932104724 0.881419104187055 2.50618640106882e-11
20 naive_boxa_d6_10 naive_boxa d6_10 10 50 1 0.46817073850354 0.468724498567948 0.534407300553877 -1.61904761904762 0.014689379915428 1.87688778586107e-05
21 naive_boxa_d6_13 naive_boxa d6_13 10 73 1 0.530807487326757 0.530942127564996 0.696589180707779 0.873689202983884 0.0303916991304334 6.44631091768978e-05