samsam2610/experiments-database
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

feat(matlab): add Satterthwaite DF + honest random-slope test to LME reports

Browse Source 
Every fitlme-based report (lme_*, paper_*, phase_*, and the variations'
analyze.m) now shows, per effect: residual-DF p, Satterthwaite-DF p, and --
for the interaction -- an HONEST test from a per-animal random-SLOPE model
(day|rat), whose Satterthwaite DF collapses toward the animal count.

New: tdcs_random_slope_interaction.m (shared helper). Wired into tdcs_lme,
tdcs_paper_lme, tdcs_phase_lme, variation_analyze; SUMMARY.csv gains
interaction_p_satt / interaction_p_rs. Regenerated all results/, variations/,
matched-effort outputs.

Key point this surfaces: Satterthwaite ~= residual on the random-INTERCEPT
model (the slope's error is at session level), so it does NOT fix
pseudoreplication; the random-slope model does. Effect: full-range mergeA2
interaction 0.009 -> 0.75 (collapses); unmerge_d0_5 0.015 -> 0.13 (n.s.);
the pooled-control early windows survive honestly (naive_a2_d0_5 0.001 ->
0.028; naive_boxa_d0_5 0.003 -> 0.036). Suite 42/42.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Experiments DB Dev
2026-07-22 15:45:19 -04:00
parent 5fcd97f81a
commit 8a18c894dd
77 changed files with 2066 additions and 345 deletions
Download Patch File Download Diff File Expand all files Collapse all files
analysis/matlab/results/lme_unmerged_full.txt
+11 -5
View File
@@ -54,11 +54,17 @@ Group: Error
{'Res Std'} 14.163 11.93 16.813
effect t (df) F (df1) p
----------------------------------------------------------------------
days x tDCS (interaction) t(67)= 1.02 F(1)= 1.041 p=0.3112
days (learning) t(67)= 9.20 F(1)= 84.665 p=1.671e-13
tDCS (main, at Day 1) t(67)= 1.04 F(1)= 1.086 p=0.3012
effect t(df) / F(df1) p (resid) Satterthwaite: p (df)
------------------------------------------------------------------------------
days x tDCS (interaction) t(67)= 1.02 F(1)= 1.041 p=0.3112 p=0.3111 (df=70)
days (learning) t(67)= 9.20 F(1)= 84.665 p=1.671e-13 p=1.04e-13 (df=71)
tDCS (main, at Day 1) t(67)= 1.04 F(1)= 1.086 p=0.3012 p=0.3116 (df=18)
HONEST LME -- per-animal random slope (day|subject): interaction F(1,8.8)=0.61, p=0.456
Note: Satterthwaite DF on the random-INTERCEPT model above stays ~= residual
(the slope's error is at the session level), so it does NOT fix pseudoreplication.
Letting each animal have its OWN slope collapses the interaction DF toward the animal
count -- this, and the per-animal slope test, are the honest learning-rate inference.
INTERPRETATION
- days x tDCS interaction: n.s. (p=0.3112, slope diff=0.94) -> slopes are parallel (no differential change over training).