feat(matlab): add Satterthwaite DF + honest random-slope test to LME reports
Every fitlme-based report (lme_*, paper_*, phase_*, and the variations' analyze.m) now shows, per effect: residual-DF p, Satterthwaite-DF p, and -- for the interaction -- an HONEST test from a per-animal random-SLOPE model (day|rat), whose Satterthwaite DF collapses toward the animal count. New: tdcs_random_slope_interaction.m (shared helper). Wired into tdcs_lme, tdcs_paper_lme, tdcs_phase_lme, variation_analyze; SUMMARY.csv gains interaction_p_satt / interaction_p_rs. Regenerated all results/, variations/, matched-effort outputs. Key point this surfaces: Satterthwaite ~= residual on the random-INTERCEPT model (the slope's error is at session level), so it does NOT fix pseudoreplication; the random-slope model does. Effect: full-range mergeA2 interaction 0.009 -> 0.75 (collapses); unmerge_d0_5 0.015 -> 0.13 (n.s.); the pooled-control early windows survive honestly (naive_a2_d0_5 0.001 -> 0.028; naive_boxa_d0_5 0.003 -> 0.036). Suite 42/42. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
@@ -0,0 +1,75 @@
|
||||
# Experiments Database — Backup
|
||||
|
||||
## Location
|
||||
```
|
||||
/home/sam/synology/Backups/Experiments-DB-Backup/
|
||||
├── daily/ ← up to 5 change-triggered daily backups
|
||||
├── weekly/ ← up to 2 unconditional weekly backups
|
||||
├── .last_backup_state ← DB fingerprint from last backup run
|
||||
└── backup.log ← all run output
|
||||
```
|
||||
|
||||
## Scripts
|
||||
```
|
||||
scripts/
|
||||
├── backup.sh ← main backup script
|
||||
└── setup_cron.sh ← installs / updates cron entries (idempotent)
|
||||
```
|
||||
|
||||
## Schedule
|
||||
| Cron | Mode | Behaviour |
|
||||
|------|------|-----------|
|
||||
| `0 2 * * *` (daily 02:00) | `daily` | Compares DB fingerprint; skips if nothing changed |
|
||||
| `0 3 * * 0` (Sunday 03:00) | `weekly` | Always dumps; ignores fingerprint |
|
||||
|
||||
To re-install cron entries after a path change:
|
||||
```bash
|
||||
./scripts/setup_cron.sh
|
||||
```
|
||||
|
||||
## Backup Format
|
||||
Files are `pg_dump --format=custom --compress=9` (`.pgdump`).
|
||||
|
||||
**Restore a backup:**
|
||||
```bash
|
||||
# Restore into a running container
|
||||
docker exec -i experiments_postgres pg_restore \
|
||||
-U expuser -d experiments_db --clean \
|
||||
< /home/sam/synology/Backups/Experiments-DB-Backup/daily/<file>.pgdump
|
||||
|
||||
# Or restore to a fresh database
|
||||
docker exec -i experiments_postgres createdb -U expuser experiments_db_restore
|
||||
docker exec -i experiments_postgres pg_restore \
|
||||
-U expuser -d experiments_db_restore \
|
||||
< /path/to/file.pgdump
|
||||
```
|
||||
|
||||
## Change Detection
|
||||
The daily run fingerprints the database as:
|
||||
```
|
||||
<experiments count>,<animals count>,<daily_statuses count>,
|
||||
<daily_analyses count>,<session_files count>,<latest audit_log timestamp>
|
||||
```
|
||||
Any insert, update, or delete on any table shifts this string and triggers a backup.
|
||||
|
||||
## Retention Policy
|
||||
| Type | Keep |
|
||||
|------|------|
|
||||
| Daily | 5 most recent |
|
||||
| Weekly | 2 most recent |
|
||||
|
||||
Older files are automatically deleted after each successful dump.
|
||||
|
||||
## Manual Run
|
||||
```bash
|
||||
# Force a backup right now (ignores change detection)
|
||||
./scripts/backup.sh weekly
|
||||
|
||||
# Run change-detect check manually
|
||||
./scripts/backup.sh daily
|
||||
```
|
||||
|
||||
## Verify Cron Is Installed
|
||||
```bash
|
||||
crontab -l | grep ExpDB
|
||||
```
|
||||
Reference in New Issue
Block a user