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feat(matlab): verbatim paper LME (behavior ~ stim+day+stim:day+(1|rat)) + power sim on it

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Adds tdcs_paper_lme replicating the paper's exact formula/variable names (paper_*
switch cases): mergeA2 reproduces the interaction F(1)=7.09 vs 7.12, p=0.009 vs
0.008, with a coverage-confound warning. Rewrites tdcs_power_sim to fit that same
formula (interaction term canonicalized to day:stim). Adds a replication test.
Suite 37/37.

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
This commit is contained in:
Experiments DB Dev
2026-07-20 12:40:26 -04:00
parent 800189371b
commit 7b5c27df8c
6 changed files with 178 additions and 47 deletions
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analysis/matlab/run_all.m
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@@ -9,7 +9,8 @@ scenarios = {'unmerged_full', 'unmerged_d0_10', ...
'lme_mergeA2_full', 'lme_mergeA2_d0_10', ...
'lme_mergeB2_full', 'lme_mergeB2_d0_10', ...
'lme_unmerged_d0_13', 'lme_mergeA2_d0_13', 'lme_mergeB2_d0_13', ...
'phase_unmerged', 'phase_mergeA2', 'phase_mergeB2'};
'phase_unmerged', 'phase_mergeA2', 'phase_mergeB2', ...
'paper_unmerged', 'paper_mergeA2', 'paper_mergeB2'};
for i = 1:numel(scenarios)
fprintf('\n\n### Running scenario: %s ###\n', scenarios{i});