diff --git a/.gitignore b/.gitignore index 925690a..bfa91ef 100644 --- a/.gitignore +++ b/.gitignore @@ -29,3 +29,4 @@ playwright-report/ # OS .DS_Store Thumbs.db +*.asv diff --git a/analysis/matlab/variation_plot.m b/analysis/matlab/variation_plot.m index 8399de2..6b28e51 100644 --- a/analysis/matlab/variation_plot.m +++ b/analysis/matlab/variation_plot.m @@ -38,21 +38,12 @@ legend([e1 e2], {sprintf('anodal, N = %d', na), sprintf('control, N = %d', nc)}, 'Location', 'northwest', 'Box', 'off'); xlabel('training day'); ylabel(ylab); title(vname, 'Interpreter', 'none'); -% Vertical x-axis tick labels. XTickLabelRotation / xtickangle are NOT honored -% by exportgraphics on a headless invisible figure, so draw the labels manually -% as rotated text objects (which always render). -set(gca, 'XTick', xd, 'XTickLabel', {}, 'Position', [0.13 0.20 0.80 0.70], ... - 'FontName', 'Arial', 'FontSize', 13, 'LineWidth', 1.5, 'Box', 'off'); -drawnow; -yl = ylim(gca); -yb = yl(1) - 0.015 * (yl(2) - yl(1)); -for k = 1:numel(xd) - text(xd(k), yb, num2str(xd(k)), 'Parent', gca, 'Rotation', 90, ... - 'HorizontalAlignment', 'right', 'VerticalAlignment', 'middle', ... - 'FontName', 'Arial', 'FontSize', 13, 'Clipping', 'off'); -end -xlh = get(gca, 'XLabel'); % push the axis label below the vertical ticks -set(xlh, 'Units', 'normalized', 'Position', [0.5 -0.15 0]); +% Compact publication layout with a tight centred plot box and ticks pointing +% out. Setting XTickLabel {} then xticklabels('auto') resets the labels cleanly +% after the Position change. +set(gca, 'XTick', xd, 'XTickLabel', {}, 'Position', [0.2 0.30 0.60 0.60], ... + 'FontName', 'Arial', 'FontSize', 13, 'LineWidth', 1.5, 'Box', 'off', 'TickDir', 'out'); +xticklabels('auto') drawnow; exportgraphics(fig, outFile, 'Resolution', 150); close(fig); diff --git a/analysis/matlab/variations/unmerge_d0_5/plotcurve.asv b/analysis/matlab/variations/unmerge_d0_5/plotcurve.asv deleted file mode 100644 index 1bb7867..0000000 --- a/analysis/matlab/variations/unmerge_d0_5/plotcurve.asv +++ /dev/null @@ -1,79 +0,0 @@ -% Variation learning-curve plots, in the style of the paper: -% "Lines indicate mean (and SEM) across animals in the anodal (red) and -% control (blue) groups." -% Produces TWO figures from this folder's data.csv: -% learning_curve.png # successes (count) per training day -% learning_curve_rate.png success rate (success/attempts) per training day -% anodal / treatment = stim 1 (red); control = stim 0 (blue). Per-group N is -% read from the data. Training day is 1-indexed (our day 0 = paper "Day 1") and -% the x-axis tick labels are drawn vertically. -% Run: matlab -batch "plotcurve" -% (Copy of analysis/matlab/variation_plot.m; see make_variation_plot.m.) - -here = fileparts(mfilename('fullpath')); -if isempty(here); here = pwd; end -vname = regexprep(here, '.*[/\\]', ''); - -D = readtable(fullfile(here, 'data.csv'), 'TextType', 'string'); -days = unique(D.day); -xd = days + 1; % plot as 1-indexed training day (paper axis) -red = [0.85 0.10 0.10]; -blue = [0.10 0.30 0.85]; - -localPlot(D, days, xd, 'count', '# successes', ... - fullfile(here, 'learning_curve.png'), vname, red, blue); -localPlot(D, days, xd, 'rate', 'success rate', ... - fullfile(here, 'learning_curve_rate.png'), vname, red, blue); - -% ------------------------------------------------------------------ helpers -function localPlot(D, days, xd, metric, ylab, outFile, vname, red, blue) -[Ma, Sa, na] = localCurve(D, 1, days, metric); % anodal / treatment -[Mc, Sc, nc] = localCurve(D, 0, days, metric); % control -fig = figure('Visible', 'off', 'Color', 'w', 'Position', [100 100 560 460]); -hold on -e1 = errorbar(xd, Ma, Sa, '-o', 'Color', red, 'MarkerFaceColor', red, 'LineWidth', 2); -e2 = errorbar(xd, Mc, Sc, '-o', 'Color', blue, 'MarkerFaceColor', blue, 'LineWidth', 2); -hold off -legend([e1 e2], {sprintf('anodal, N = %d', na), sprintf('control, N = %d', nc)}, ... - 'Location', 'northwest', 'Box', 'off'); -xlabel('training day'); ylabel(ylab); -title(vname, 'Interpreter', 'none'); - -set(gca, 'XTick', xd, 'XTickLabel', {}, 'Position', [0.13 0.20 0.80 0.70], ... - 'FontName', 'Arial', 'FontSize', 13, 'LineWidth', 1.5, 'Box', 'off', 'TickDir', 'out'); -drawnow; -yl = ylim(gca); -yb = yl(1) - 0.015 * (yl(2) - yl(1)); -for k = 1:numel(xd) - text(xd(k), yb, num2str(xd(k)), 'Parent', gca, ... - 'HorizontalAlignment', 'right', 'VerticalAlignment', 'middle', ... - 'FontName', 'Arial', 'FontSize', 13, 'Clipping', 'off'); -end -xlh = get(gca, 'XLabel'); % push the axis label below the vertical ticks -set(xlh, 'Units', 'normalized', 'Position', [0.5 -0.15 0]); -drawnow; -exportgraphics(fig, outFile, 'Resolution', 150); -close(fig); -fprintf('%s: wrote %s (anodal N=%d, control N=%d)\n', vname, outFile, na, nc); -end - -function [M, S, n] = localCurve(D, stimVal, days, metric) -%LOCALCURVE Per-day mean and SEM across the animals in a group, for a metric. -subs = unique(D.subject(D.stim == stimVal)); -n = numel(subs); -X = nan(numel(days), n); -for j = 1:n - for i = 1:numel(days) - r = D.subject == subs(j) & D.day == days(i); - if ~any(r); continue; end - if strcmp(metric, 'rate') - tot = sum(D.total(r)); - if tot > 0; X(i, j) = sum(D.success(r)) / tot; end - else - X(i, j) = mean(D.success(r)); - end - end -end -M = mean(X, 2, 'omitnan'); -S = std(X, [], 2, 'omitnan') ./ sqrt(sum(~isnan(X), 2)); -end