analysis(matlab): rate + count outputs, variation batch 4

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-24 02:32:53 -04:00
parent 0e16690c8f
commit 1606eb698b
72 changed files with 1869 additions and 891 deletions
@@ -0,0 +1,68 @@
+==============================================================================
+VARIATION: right_only_d6_13   [metric: success RATE (success/attempts)]
+==============================================================================
+model: behavior ~ stim + day + stim:day + (1|rat)   (behavior = success RATE (success/attempts))
+day = training day within window (0 = first analyzed day)
+treatment (stim=1): Electrode-Box-B2, Right-Electrode
+control   (stim=0): Electrode-Box-A2
+N = 6 rats, 42 sessions   raw day coverage: treat 6..13, control 6..13
+(equal day coverage over this window)
+
+==============================================================================
+FULL MODEL SUMMARY -- fitlme
+==============================================================================
+
+Linear mixed-effects model fit by ML
+
+Model information:
+    Number of observations              42
+    Fixed effects coefficients           4
+    Random effects coefficients          6
+    Covariance parameters                2
+
+Formula:
+    behavior ~ 1 + day*stim + (1 | rat)
+
+Model fit statistics:
+    AIC        BIC        LogLikelihood    Deviance
+    -107.29    -96.867    59.646           -119.29 
+
+Fixed effects coefficients (95% CIs):
+    Name                   Estimate     SE           tStat      DF    pValue    
+    {'(Intercept)'}          0.53543     0.038925     13.755    38    2.4576e-16
+    {'day'        }        0.0034157    0.0070712    0.48304    38       0.63184
+    {'stim'       }         0.077975     0.047524     1.6407    38        0.1091
+    {'day:stim'   }         0.018776    0.0083266     2.2549    38      0.029981
+
+
+    Lower        Upper   
+      0.45663     0.61423
+    -0.010899    0.017731
+    -0.018233     0.17418
+    0.0019195    0.035632
+
+Random effects covariance parameters (95% CIs):
+Group: rat (6 Levels)
+    Name1                  Name2                  Type           Estimate
+    {'(Intercept)'}        {'(Intercept)'}        {'std'}        0.042741
+
+
+    Lower       Upper   
+    0.021774    0.083895
+
+Group: Error
+    Name               Estimate    Lower       Upper   
+    {'Res Std'}        0.051638    0.041022    0.065002
+
+
+effect                     t(df) / F(df1)     p (resid)    Satterthwaite: p (df)
+----------------------------------------------------------------------------
+stim x day (interaction)   t(38)=  2.25 F(1)=  5.085  p=0.02998    p=0.03003 (df=38)
+day (learning)             t(38)=  0.48 F(1)=  0.233  p=0.6318    p=0.6318 (df=38)
+stim (main, window start)  t(38)=  1.64 F(1)=  2.692  p=0.1091    p=0.1287 (df=11)
+interaction 95% CI: [+0.00192, +0.03563]
+HONEST LME (per-animal random slope, day|rat): interaction F(1,4.0)=0.24, p=0.6492
+  (Satterthwaite DF ~= residual on this random-intercept model; the random-slope
+   model above is the honest learning-rate test -- DF collapses toward the animal count.)
+INTERPRETATION: stim x day interaction SIGNIFICANT positive -- treatment improves FASTER (benefit accumulates) (p=0.02998, slope diff=+0.01878)
+Paper (N=24, count): interaction t(227)=2.68, F(1)=7.12, p=0.008.