analysis(matlab): rate + count outputs, variation batch 4

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-24 02:32:53 -04:00
parent 0e16690c8f
commit 1606eb698b
72 changed files with 1869 additions and 891 deletions
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+==============================================================================
+VARIATION: right_only_d0_5   [metric: success RATE (success/attempts)]
+==============================================================================
+model: behavior ~ stim + day + stim:day + (1|rat)   (behavior = success RATE (success/attempts))
+day = training day within window (0 = first analyzed day)
+treatment (stim=1): Electrode-Box-B2, Right-Electrode
+control   (stim=0): Electrode-Box-A2
+N = 7 rats, 42 sessions   raw day coverage: treat 0..5, control 0..5
+(equal day coverage over this window)
+
+==============================================================================
+FULL MODEL SUMMARY -- fitlme
+==============================================================================
+
+Linear mixed-effects model fit by ML
+
+Model information:
+    Number of observations              42
+    Fixed effects coefficients           4
+    Random effects coefficients          7
+    Covariance parameters                2
+
+Formula:
+    behavior ~ 1 + day*stim + (1 | rat)
+
+Model fit statistics:
+    AIC        BIC        LogLikelihood    Deviance
+    -78.771    -68.345    45.385           -90.771 
+
+Fixed effects coefficients (95% CIs):
+    Name                   Estimate     SE          tStat      DF    pValue    
+    {'(Intercept)'}           0.2186    0.041919     5.2147    38    6.7762e-06
+    {'day'        }         0.043366    0.010166     4.2656    38    0.00012743
+    {'stim'       }        -0.074496    0.055454    -1.3434    38       0.18712
+    {'day:stim'   }         0.049806    0.013449     3.7033    38    0.00067357
+
+
+    Lower       Upper   
+     0.13374     0.30346
+    0.022785    0.063946
+    -0.18676    0.037766
+     0.02258    0.077032
+
+Random effects covariance parameters (95% CIs):
+Group: rat (7 Levels)
+    Name1                  Name2                  Type           Estimate
+    {'(Intercept)'}        {'(Intercept)'}        {'std'}        0.049289
+
+
+    Lower       Upper  
+    0.023894    0.10168
+
+Group: Error
+    Name               Estimate    Lower       Upper   
+    {'Res Std'}        0.073663    0.058279    0.093108
+
+
+effect                     t(df) / F(df1)     p (resid)    Satterthwaite: p (df)
+----------------------------------------------------------------------------
+stim x day (interaction)   t(38)=  3.70 F(1)= 13.715  p=0.0006736    p=0.0007295 (df=35)
+day (learning)             t(38)=  4.27 F(1)= 18.195  p=0.0001274    p=0.0001438 (df=35)
+stim (main, window start)  t(38)= -1.34 F(1)=  1.805  p=0.1871    p=0.1975 (df=16)
+interaction 95% CI: [+0.02258, +0.07703]
+HONEST LME (per-animal random slope, day|rat): interaction F(1,7.0)=9.42, p=0.0181
+  (Satterthwaite DF ~= residual on this random-intercept model; the random-slope
+   model above is the honest learning-rate test -- DF collapses toward the animal count.)
+INTERPRETATION: stim x day interaction SIGNIFICANT positive -- treatment improves FASTER (benefit accumulates) (p=0.0006736, slope diff=+0.04981)
+Paper (N=24, count): interaction t(227)=2.68, F(1)=7.12, p=0.008.