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analysis(matlab): rate + count outputs, variation batch 3

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Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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Experiments DB Dev
2026-07-24 02:32:52 -04:00
parent 6ba21a1a35
commit 0e16690c8f
72 changed files with 1875 additions and 897 deletions
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analysis/matlab/variations/naive_boxa_d6_10/power_result.txt
+6 -7
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@@ -1,11 +1,11 @@
==============================================================================
POWER SIMULATION -- naive_boxa_d6_10
POWER SIMULATION -- naive_boxa_d6_10 [metric: # successes (count)]
==============================================================================
model: behavior ~ stim + day + stim:day + (1|rat) (success COUNT; day within-window)
model: behavior ~ stim + day + stim:day + (1|rat) (behavior = # successes (count); day within-window)
observed groups: stim n=3, control n=7 nrep=120, alpha=0.05
ground truth: stim:day=-1.62/day, rat SD=11.24, residual SD=10.14, days=5
ground truth: stim:day=-1.619/day, rat SD=11.24, residual SD=10.14, days=5
true stim:day interaction = -1.62 (100% of observed)
true stim:day interaction = -1.619 (100% of observed)
N/group | per-animal power | LME power
------------------------------------------
3 | 0.05 | 0.08 <- observed
@@ -15,7 +15,7 @@ ground truth: stim:day=-1.62/day, rat SD=11.24, residual SD=10.14, days=5
16 | 0.28 | 0.30
24 | 0.41 | 0.45
true stim:day interaction = -0.81 (50% of observed)
true stim:day interaction = -0.8095 (50% of observed)
N/group | per-animal power | LME power
------------------------------------------
3 | 0.03 | 0.08 <- observed
@@ -25,5 +25,4 @@ ground truth: stim:day=-1.62/day, rat SD=11.24, residual SD=10.14, days=5
16 | 0.11 | 0.09
24 | 0.12 | 0.13
Read the per-animal column as the honest power. At the observed N this study
is typically underpowered; per-animal power reaches ~0.8 only at larger N.
Read the per-animal column as the honest power; LME is optimistic (obs-level DF).